Statistics

Biological objects (proteins, genes, regulatory regions, organisms, etc.) by Data Sources

Data Source*	Data Contribution#	Percent
String	10702131	53.041
KEGG	5427449	26.899
Stitch	1997410	9.899
NCBI GEO	1808922	8.965
NCBI Taxonomy	324863	1.61
TRRD	107843	0.534
GregList	97177	0.482
BIND	73299	0.363
GeneCards	50321	0.249
GeneCardsUpdate	50228	0.249
GeneRIF	50168	0.249
TRED	40060	0.199
TRANSFAC	36453	0.181
PROTISA	33847	0.168
CMGSdb	20674	0.102
CancerChromosomes	20673	0.102
DBTSS	16564	0.082
TRSDB	12704	0.063
PAZAR	12418	0.062
ODB	11364	0.056
ctcbindsitedb_experimentally_identified	11077	0.055
epd	4769	0.024
Wikipedia	4206	0.021
agris_attfdb	1838	0.009
GeneNet	1332	0.007
tfcat	1285	0.006
coryneregnet_escherichia_coli_k12	1136	0.006
oreganno	1074	0.005
KEGGOrganismNames	1050	0.005
flytf	965	0.005
dbtbs	807	0.004
doop	722	0.004
Uniprobe	645	0.003
coryneregnet_corynebacterium_glutamicum	574	0.003
agris_atregnet	345	0.002
promec	247	0.001
activity	138	0.001
jaspar	95	0
selex_db	93	0
mapper	89	0
yeastract	85	0
aspd	80	0
plantprom	65	0
place	65	0
coryneregnet_corynebacterium_diphtheriae	63	0
plantcare	58	0
coryneregnet_corynebacterium_urealyticum	26	0
scpd	24	0
rsnp_db	21	0
abs	14	0
ctcbindsitedb_predicted	13	0
coryneregnet_mycobacterium_tuberculosis_cdc1551	12	0
coryneregnet_corynebacterium_efficiens	4	0
vista_enhancer_browser	3	0
ptm_switchboard	1	0
coryneregnet_corynebacterium_jeikeium	1	0
redfly	1	0
Total	20177007

Biological Relations/Interaction/Reactios by Data Source

Data Source*	Data Contribution#	Percent
stringDB	192849520	98.983
kegg	1689064	0.867
bind data graph	187336	0.096
generif	79005	0.041
transfac	26554	0.014
wiki	16	0
Total	194831532

Proteins by Data Source

Data Source*	Data Contribution#	Percent
stringDB	2483276	52.393
NCBI GEO	1802939	38.039
kegg	681342	14.375
greglist	97177	2.05
BIND	71804	1.515
GeneCards	50321	1.062
genecardslast	50228	1.06
GeneRIF	50094	1.057
tred	40057	0.845
protisa	33510	0.707
CancerChromosomes	20673	0.436
cmgsdb	20672	0.436
dbtss	16561	0.349
trsdb	12704	0.268
pazar	12416	0.262
ctcbindsitedb_experimentally_identified	11077	0.234
odb	9138	0.193
epd	4640	0.098
wiki	4046	0.085
agris_attfdb	1838	0.039
genenet	1190	0.025
coryneregnet_escherichia_coli_k12	1136	0.024
oreganno	1074	0.023
tfcat	1058	0.022
flytf	965	0.02
dbtbs	805	0.017
doop	690	0.015
uniprobe	645	0.014
coryneregnet_corynebacterium_glutamicum	574	0.012
agris_atregnet	345	0.007
promec	247	0.005
activity	96	0.002
jaspar	94	0.002
yeastract	85	0.002
aspd	79	0.002
selex_db	77	0.002
coryneregnet_corynebacterium_diphtheriae	63	0.001
plantprom	62	0.001
stitch	53	0.001
coryneregnet_corynebacterium_urealyticum	26	0.001
scpd	24	0.001
place	24	0.001
rsnp_db	21	0
plantcare	19	0
mapper	14	0
ctcbindsitedb_predicted	13	0
coryneregnet_mycobacterium_tuberculosis_cdc1551	12	0
coryneregnet_corynebacterium_efficiens	4	0
vista_enhancer_browser	3	0
ptm_switchboard	1	0
coryneregnet_corynebacterium_jeikeium	1	0
Total	4739698

Genes by Data Source

Data Source*	Data Contribution#	Percent
stringDB	2483949	97.615
trrd	51080	2.007
transfac	9626	0.378
wiki	49	0.002
Total	2544646

Protein types

Class	Data Contribution#
protein	4739698
proteinMolecularFunction	7997
transcription factor	7997
Enzyme	766
protein	33

Genomic regions

Class	Data Contribution#
gene	2544646
binding_site	16552
regulatory_region	3807
tmRNA	363
codon	69
ncRNA	59
rRNA	35
reagent	18
promoter	16
prophage	16
locus_control_region	14
STS	11
polypeptide	8
MTE	5
region	3
assembly	2
read	2

* - The data sources are listed in the order of integration into the IntegromeDB
# - The number provides a quantity of entries added to the system additionally to the sources listed above of each particular source; if a particular entity was already integrated in the system from for example String and/or KEGG databases it will not be counted for Stitch unless the last provides new attributes for the entity, including synonyms