You can download data sets and subsets directly by following the download link on any search result page. For downloading complete data sets we offer direct links on this page. All provided datasets are in RDF/XML format and available for download both as rar-archives and tar-archives.
| Category | Download link | Alternative link |
| Proteins - Homo sapiens | proteins-hs.rar | proteins-hs.tar.gz |
| Proteins - Mus musculus | proteins-mm.rar | proteins-mm.tar.gz |
| Proteins - Rattus norvegicus | proteins-rn.rar | proteins-rn.tar.gz |
| Publications | publications.rar | publications.tar.gz |
| Pathways | pathways.rar | pathways.tar.gz |
| Synonyms | synonyms.rar | interactions.tar.gz |
| Interactions | interactions.rar | interactions.tar.gz |